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HiC-Pro

note

Pipeline for Hi-C data processing.

https://github.com/nservant/HiC-Pro

Note - because this module shares sample identifiers across multiple files, the --fn_as_s_name / config.use_filename_as_sample_name functionality has been disabled and has no effect.

The MultiQC module is supported since HiC-Pro v2.11.0.

File search patterns​

hicpro/assplit:
  fn: '*assplit.stat'
hicpro/mRSstat:
  contents: Valid_interaction_pairs
  fn: '*RSstat'
hicpro/mergestat:
  contents: valid_interaction
  fn: '*.mergestat'
  num_lines: 10
hicpro/mmapstat:
  contents: total_R
  fn: '*mapstat'
  num_lines: 10
hicpro/mpairstat:
  contents: Total_pairs_processed
  fn: '*pairstat'
  num_lines: 10