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HUMID

note

Reference-free tool to quickly remove duplicates from FastQ files, with or without UMIs.

https://github.com/jfjlaros/HUMID

File search patterns​

humid/clusters:
  contents_re: '[0-9]+ [0-9]+'
  fn: clusters.dat
  num_lines: 1
humid/counts:
  contents_re: '[0-9]+ [0-9]+'
  fn: counts.dat
  num_lines: 1
humid/neighbours:
  contents_re: '[0-9]+ [0-9]+'
  fn: neigh.dat
  num_lines: 1
humid/stats:
  contents: 'total: '
  fn: stats.dat
  num_lines: 1